- Create excel files with your gene sets of interest, in this case I have named it Gene_Set_of_interest.xlsx (you can upload multiple files with different names and gene sets). Please submit CCNA numbers only, not real names of the genes.
- Download Github repository files
- CCNA_CAUVN_taxid565050_Uniprot_GOA_240323.xlsx
- KEGG_CCNA_All.xlsx
- COG_CCNA_All.xlsx
- KEGG_pathway_masterfile.xlsx
- gene_cog_table_duplicates_removed.xlsx
- Open the .ipynb file on google collab on your drive.
- Functional Annotation and Enrichment calculations on dataset of interest using KEGG, COG, GO.ipynb
- Upload the files from github repository to the google collab file
- Run the first line of code
- Add the files for your gene set of interest in the folder called data
- Run all the code cells after data has been uploaded.
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