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Wei Zhang's Projects

aml-crnde-analysis icon aml-crnde-analysis

Oncogenic role of lncRNA CRNDE in acute promyelocytic leukemia and NPM1-mutant acute myeloid leukemia

cellranger icon cellranger

Helper functions to work with spreadsheets and the "A1:D10" style of cell range specification

clustcr icon clustcr

CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offering functionalities for downstream analysis of clustering results.

dropletutils icon dropletutils

Clone of the Bioconductor repository for the DropletUtils package.

dyno icon dyno

Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕

emg-viral-pipeline icon emg-viral-pipeline

VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies

fastqcheck icon fastqcheck

Generate statistics on and validate fastq files

immunarch icon immunarch

🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

kraken2 icon kraken2

The second version of the Kraken taxonomic sequence classification system

middleclick icon middleclick

Emulate a middleclick with triple tap on MacBook trackpad and Magic Mouse.

mir-island icon mir-island

an ultrafast and memory-efficient tool for plant miRNA annotation

ncrna icon ncrna

Config files for my GitHub profile.

pathogentrack icon pathogentrack

A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.

scasa icon scasa

SCASA: Single cell transcript quantification tool

seqkit icon seqkit

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang

shields icon shields

Concise, consistent, and legible badges in SVG and raster format

single-cell-rna-seq icon single-cell-rna-seq

A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.

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