Issues with some special characters in annotatorplus api about ncbo_annotator HOT 3 OPEN

Hello @dilshans2k,

Thank you for the detailed report; We are not right now doing any development on the annotatorplus project, but we will make sure to fix it, in future iterations.

A temporary fix, is to remove special characters from the submitted text, using a regex like this [^\w\s].

As reference here are related issues ontoportal-lirmm/annotators#49, ontoportal-lirmm/bioportal_web_ui#558, and the temporary fix that we did at AgroPortal to remove special characters from the submitted text ontoportal-lirmm/bioportal_web_ui#561

FYI @jonquet, @Bilelkihal

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Thanks for the prompt reply.
Yes, the solution provided is one way to get it working.

I was wondering, is the annotatorplus repo open source? Also if the database or the kg is publicly available?

from ncbo_annotator.

Hello,

Yes, the annotatorplus repo is open-source, feel free to propose any contribution here https://github.com/ontoportal-lirmm/annotators.

The KG is not publicly available, as Biooportal doesn't offer a SPARQL endpoint, but you can use the API https://data.bioontology.org/ to access all the public ontologies and terms.

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