Comments (7)
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Yes, this is a good case to use Preferences. The membrane will be shown by default since it carries important information for biologists. Users could change the Preferences to hide it by default.
from icn3d.
I disagree. Here's why I think the red and blue discs should be hidden by default:
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The structure I reported, LQQ, is not a membrane protein.
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It's easy to find structures like 5VBL that are membrane proteins where the weird discs do not appear on loading. And the Toggle Membrane feature is not available.
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We did not have to work hard to find these two examples.
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The NCBI records in the MMDB do not show these discs. I think it makes more sense to click an image at the NCBI and see the same image appear in iCn3D.
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It is confusing to users to have these discs appear in structures, seemingly at random. I think you should look at the image in GitHub before drawing conclusions.
I am happy discuss this.
from icn3d.
I implemented "Show Membrane" in the menu "Style > Preferences". By default the membrane will be shown if it's available. Users could modify the Preferences as they like.
from icn3d.
This should really be the other way around with membrane objects hidden by default.
Our students don't know what these disc-like objects are. We didn't know what they were until Aron told us.
We should not be introducing new objects into structures unless the users want to see them.
I think this is something that should be turned on in Preferences and not on by default.
from icn3d.
from icn3d.
I fixed the membrane data of 5VBL. Now it's showing up: https://www.ncbi.nlm.nih.gov/Structure/icn3d/full.html?mmdbid=5VBL
from icn3d.
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