Comments (4)
youkha
commented on August 20, 2024
The secondary structure is annotated automatically. Please read
the documentation
example:
https://structure.ncbi.nlm.nih.gov/icn3d/share.html?6BioUubm5ccFRwP46
…On Mon, Nov 28, 2022 at 6:30 AM 최원종 ***@***.***> wrote:
Hello,
We are currently checking Alphafold prediction results by including iCn3D
in our lab’s web server.
When opening the pdb file created by Alphafold’s prediction in iCn3D,
secondary structures such as α-helix are not being expressed.
We would like to know why they are not being expressed and whether there
is a way to solve the problem.
Thank you.
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jiywang3
commented on August 20, 2024
I understood the issue. When a PDB file is posted (instead of get) to NCBI servers, somehow jsonp didn't work. That's why iCn3D from your server can not get the secondary structure information. I will try to make jsonp work for the post method at NCBI. Meanwhile, you can use DSSP servers elsewhere to get the secondary structure information and add it to your PDB file.
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danny2551515
commented on August 20, 2024
I'm always grateful for your help and advice
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jiywang3
commented on August 20, 2024
I modified the backend service and it should work now. You can get the most recent copy from icn3d npm and try it again. Please let me know if you see any further problems.
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