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pharos_frontend's Introduction

Pharos front end UI

Pharos

This project was generated with Angular CLI version 8+.

Update environment variables for your instance

Run npm install to get all dependencies

Development server

Run ng serve for a dev server. Navigate to http://localhost:4200/. The app will automatically reload if you change any of the source files.

Code scaffolding

Run ng generate component component-name to generate a new component. You can also use ng generate directive|pipe|service|class|guard|interface|enum|module.

Build

Run ng build to build the project. The build artifacts will be stored in the dist/ directory. Use the -prod flag for a production build.

Docker

Run docker build -t pharos . to build image. Run docker run -dp 80:4000 pharos:latest to deploy to Docker

Running unit tests

Run ng test to execute the unit tests via Karma.

Running end-to-end tests

Run ng e2e to execute the end-to-end tests via Protractor.

Further help

To get more help on the Angular CLI use ng help or go check out the Angular CLI README.

Leave base href as '/' when deploying to AWS

To deploy on gcloud

  • git pull
  • npm install
  • npm run build:ssr
  • gcloud app deploy --version {name it}

protvista-angular

pharos_frontend's People

Contributors

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pharos_frontend's Issues

autocomplete options for UniProt_Name don't return any results

If you search for something and autocomplete gives you options under "UniProt Name" selecting it gives you 0 result targets. The filter options are collapsed and blank, and targets are empty.

If you do that from the targets page, the filter options are collapsed and blank again, but the targets are the same as they were in the last query. Actually we're presenting bad data at that point because the "Selected Filters:" options makes it look like you successfully added a filter on that term, but the results don't match that.

facet menu width is erratic

view all categories, close the sidenav, then open it, the width of the target list is only 25%. need to reset overlay type on menu close.

verify rss data

new datasources have been added. verify cells, chemical tools, nanobret

Add IDG targets list as filter

This will be a list of uniprot ids that will need to be filtered/stored in a new table in the same way as facets. They should be returned as a facet on all queries.

How to construct ligand summary path URL?

I am trying to understand how you construct ligand summary page URLs
for the Pharos web site.

For instance, acetazolamide / CHEMBL20 has the URL:

https://pharos.nih.gov/ligands/9XY1117CMPQQ

The 9XY1117CMPQQ HASH does not appear in the SQL dump of
the Pharos database that I can find. If the string '9XY1117CMPQQ' is
derived from the LyChI hash, could you please describe precisely
which LyChI options produce this key, or what transformation of
the 4-layer LyChI hash produces this string.

Thanks very much for you help with this.

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