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regulatory_network_tools

Code for identifying regulatory networks.

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regulatory_network_tools's Issues

Need some information about defining the enhancers

Dear Nathan,

I am interested in knowing how you defined the enhance region here in hg19? Please correct me if I am wrong, Are you using the ENCODE all genes peak files and then trying to select the regions of peaks for enhancers and then putting them all together in one bed post merging? Since the commenting is not very clear in the code I would like to know. Thanks a lot, I could not find a better way to contact you rather than posting an issue. Thanks

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