navis-org Goto Github PK
Name: NAVis
Type: Organization
Bio: Tools for Neuron Analysis & Visualization
Location: United Kingdom
NAVis's Projects
.github
connectomes
[WIP] Unified interface to various backends used for hosting connectomes in the cloud.
fafbseg-py
Tools to work with the FlyWire connectome. Fully interoperable with navis.
fastcore
[WIP] Fast core functions for navis re-implemented in Cython.
navis
Python library for analysis of neuroanatomical data.
navis-flybrains
Transforms for navis that enable mapping between different Drosophila template brains.
navis-mousebrains
Template brains and transforms for mouse brains
navis-nblast-gpu
NBLAST running on the GPU using PyTorch [WIP]
navis-nblast-large
Implementation of NBLAST for large datasets
navis-nsim
Interface between navis and the NEURON simulator
navis-pipelines
Run navis pipelines described by YAML files.
octarine-navis-plugin
Octarine plugin to visualize navis objects
pymaid
Python library to interface with CATMAID servers. Fully interoperable with navis.
pymaid_template
A starter kit for people using python-catmaid for neuronal analysis
skeletor
Extraction of 3D skeletons from meshes.
sparse-cubes
Marching cubes for sparse matrices
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