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jefferis avatar jefferis commented on July 30, 2024

Thanks for your interest. You can access this information using the https://github.com/jefferis/flycircuit package.

library(flycircuit)
apres16k.p0=load_si_data('apres16k.p0.rds')
apdf=as.data.frame(apres16k.p0)
str(apdf)

You can take a look at the source code for the figures at http://flybrain.mrc-lmb.cam.ac.uk/si/nblast/www/paper/ and https://github.com/jefferislab/NBLAST_figures.
If you need more help, please contact us via https://groups.google.com/forum/embed/?place=forum/nat-user#!forum/nat-user.

from nat.nblast.

jennyl617 avatar jennyl617 commented on July 30, 2024

Just a quick question: I noticed I get different flycircuit ids when I do the following:
fc_idid(apdf$item[(apdf$cluster == 1)])
versus
apdf$idx[(apdf$cluster == 1)]

Did I perhaps miss something? Looks like the ids for the first half of the list are correct, but begin to diverge afterward. Thanks so much for your help!

from nat.nblast.

jefferis avatar jefferis commented on July 30, 2024

The first form using fcidid is correct. The other id is not a flycircuit id but a sequential number generated in the clustering. In general I recommend referring to neurons using the character identifiers to avoid such ambiguities.

from nat.nblast.

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