Comments (2)
There is a difference between the conversion in WeightedNNBasedLinesetMatching
and converting using e.g. dotprops(,resample=T)
. In the first case the direction vector is the vector from each point to its head point, without resampling. In the second case it is based on k nearest neighbours. It would probably be best to stick to pre-conversion to dotprops in most cases. I haven't profiled in ages, but I am not sure that the conversion part of WeightedNNBasedLinesetMatching.neuron
is that slow since there is no nearest neighbour calculation or eigenvector decomposition.
from nat.nblast.
I meant the conversion I added in d55c544 to allow it to handle the situation where query
and target
are not of the same class. I tried doing this higher up, in nblast()
, but this messed a few things up — it looks like it is worth me retrying this and attempting to fix the problems.
from nat.nblast.
Related Issues (20)
- Release v1.6.2 to CRAN?
- Add auto progress bars for nblast
- create_scoringmatrix should have a UseAlpha option HOT 1
- add plot3d.nblastres function and give nblast option to return per segment scores HOT 23
- fix imports for CRAN HOT 7
- nblast fails to find smat.fcwb if nblast package is not attached. HOT 4
- accept scorematrix as first arg of nhclust
- Include neuron list of superclusters and clusters from nblast online? HOT 3
- correct docs for UseAlpha option of nblast
- NeuriteBlast fails for FAFB neurons HOT 1
- nblast (or nblast_allbyall) fails with error "Cloud has no points"
- Release nat.nblast 1.6.5 HOT 3
- nblast for swc files HOT 11
- optimise for memory for very large all by all NBLAST
- Multi-core performance and memory consumption HOT 4
- Have nblast work with Labels in given neuronlist/dotprops objects HOT 2
- Allow nblast to use basic topological information about neurons HOT 11
- Zenodo DOI HOT 1
- [BUG] in scaling when neurons don't have names
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from nat.nblast.