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rohana.windowed-prediction's Introduction

Membrane and Synapse Detection

Convolutional network for membrane and synapse detection.

Dependencies

Install

Install and upgrade all dependencies:

pip install -U numpy theano matplotlib pyyaml pil scipy mahotas gala

Clone repository:

git clone https://github.com/Rhoana/windowed-prediction.git

Run (default settings)

  1. Place training data in data-folder. Data can be downloaded from Google Drive.
  2. Specify data-folders in config/global.yaml
  3. Run default configuration: python runner.py
  4. Plot latest run: python plot.py

Documentation

Further documentation can be found here (under progress).

Contact

Hallvard Moian Nydal - [email protected]

rohana.windowed-prediction's People

Contributors

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Watchers

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