ThePlotFMRI allows to create a figure summarizing a functional data set as Jonathan Power introduced it in 2017. The fMRI data set is assumed to be preprocessed with SPM. The functional file and some pre-processed files are mandatory to run this script. More info on how to pre-process functional files at https://www.fmrwhy.com/2018/07/20/the-plot-spm/. This script performs the plotting only, not the pre-processing.

To run ThePlot for the first time, I provided an example data set.

Just run the following command in the project directory.

python thePlotFMRI.py -f test_data/bold_subject_task1-vibration_run-1.nii.gz -r test_data/rp_subject_task1-vibration_run-1.txt -g test_data/rc1_subject_T1w.nii.gz -w test_data/rc2_subject_T1w.nii.gz -c test_data/rc3_subject_T1w.nii.gz -o test_example.png