Contribution to the ToothFairy Challenge (MICCAI 2023) by Marek Wodzinski (3rd place).

Here you can see the full source code used to train / test the proposed solution.

Only the final experiment is left (the one used for the final Docker submission).

• In order to reproduce the experiment you should:
  • Download the Toothfairy dataset Link
  • Update the hpc_paths.py and paths.py files.
  • Run the parse_toothfairy.py
  • Run the elastic_toothfairy.py
  • Run the training using run_toothfairy_trainer.py
  • And finally use the trained model for inference using inference.py

The network was trained using HPC infrastructure (PLGRID). Therefore the .slurm scripts are omitted for clarity.

Please cite the ToothFairy challenge paper (TODO) if you found the source code useful. Please find the method description: (TODO).