read.bam has disappeared!! we need it to be somewhere for essential mskilab activities ..

thanks

Something went wrong here, Roxygen wont build and the package won't install. A lot of errors coming up

There are some functions in skitools that won't be able to run b/c they depend on functions in either gTrack or gUtils. Just to double check, skitools is serving as a home for functions that might be used but, not as a stand alone package?

There are functions in the current version of gUtils such as gr.pairflip that require certain functions such as gr.flip. That function is not in the Feb. version of gUtils so will skitools become a dependency of gUtils or should I add gr.flip to gUtils?

Functions "get_pp_ind" and "get_seg" are used but not defined anywhere.