docker network create --driver bridge trial-net
docker volume create oc-db-data
docker volume create oc-data
We make it save its data in the oc-db-data volume.
Must be postgres 9.5
docker run --name=oc-db -d -v oc-db-data:/var/lib/postgresql/data -e POSTGRES_PASSWORD=MASTER_PG_PASSWORD_CHANGE_ME --network trial-net postgres:9.5
This makes the database for openclinica and sets a password
docker exec oc-db su postgres -c $'psql -c "CREATE ROLE clinica LOGIN ENCRYPTED PASSWORD \'OC_DB_PASSWORD_CHANGE_ME\' SUPERUSER NOINHERIT NOCREATEDB NOCREATEROLE" && psql -c "CREATE DATABASE openclinica WITH ENCODING=\'UTF8\' OWNER=clinica" && echo "host all clinica 0.0.0.0/0 md5" >> $PGDATA/pg_hba.conf && /usr/lib/postgresql/$PG_MAJOR/bin/pg_ctl reload -D $PGDATA'
git clone https://github.com/mshunshin/openclinica-docker.git
The default files are located in ./openclinica.config with a .new suffix. Copy them, then edit the passwords and settings
cp ./openclinica.config/tomcat-users.xml.new ./openclinica.config/tomcat-users.xml
cp ./openclinica.config/datainfo.properties.new ./openclinica.config/datainfo.properties
cp ./openclinica.config/logging.properties.new ./openclinica.config/logging.properties
tomcat-users.xml -> change the password (all roles are removed anyway).
vi ./openclinica.config/tomcat-users.xml
<tomcat-users>
<role rolename="manager-gui"/>
<role rolename="manager-script"/>
<role rolename="manager-jmx"/>
<role rolename="admin-gui"/>
<role rolename="admin-script"/>
<user username="admin" password="TOMCAT_ADMIN_PASSWORD_CHANGE_ME" roles=""/>
</tomcat-users>
datainfo.properties -> Change the database connection settings.
vi ./openclinica.config/datainfo.properties
dbType=postgres
dbUser=clinica
dbPass=OC_DB_PASSWORD_CHANGE_ME
db=openclinica
dbPort=5432
dbHost=oc-db
etc.
logging.properties -> No need to change anything here unless you want to change the log level.
vi ./openclinica.config/logging.properties
org.apache.catalina.core.ContainerBase.[Catalina].level = INFO
org.apache.catalina.core.ContainerBase.[Catalina].handlers = java.util.logging.ConsoleHandler
You must be in the openclinica directory.
cd openclinica
docker build -t oc .
# If running without a proxy infront opens up port 81 -> 8080
docker run --name=oc -d -v oc-data:/usr/local/tomcat/openclinica.data -p 81:8080 --network trial-net oc
# If running with a proxy you don't need to open up a port.
docker run --name=oc -d -v oc-data:/usr/local/tomcat/openclinica.data --network trial-net oc
Goto http://ip_address:81/OpenClinica
Get the container id for postgres
docker container ls
Then get a shell in it.
docker exec -it container_id bash
Change to the postgres user (sudo is not installed, so use su) and run psql
su postgres
psql
Then fix the password
ALTER User clinica WITH ENCRYPTED PASSWORD 'NEW_PASSWORD';
\q
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