PrESOgenesis is a  Support Vector Machine-based classifier  to predict the  
  
  spermatogenesis/embryogenesis/oogenesis  related  proteins  based on  1920  
  
  meaningful protein sequence features. It takes protein/DNA FASTA sequences 
  
  as  input,  and  generate  output  about  the potential of a protein to be 
  
  involved  in spermatogenesis/embryogenesis/oogenesis. PrESOgenesis depends 
  
  on  two programs (libsvm and protr  package in R) and can be run on Linux. 
  
  Also,  it  use  TransDecoder  software  to convert the DNA sequences (mRNA 
  
  transcripts that converted to DNA) to protein.   

      It just need R software to be installed in your system.

      Drag install.sh file to terminal for automatic installing all of the  
      
      dependencies. This will build and install the libsvm and TransDecoder
      
      software and protr package.
      
  
  		$ gzip -dc PrESOgenesis.tar.gz | tar x 
  
  		$ cd PrESOgenesis
  
 		$ chmod 777  /full/path/to/install.sh
 		
 		$ /full/path/to/install.sh

  		$ /full/path/to/PrESOgenesis    /full/path/to/Candidates.fa

 The results will be stored in PrESOgenesis_resultss.txt. The score represents a 

 protein's probability of belonging to the  spermatogenesis/embryogenesis/oogenesis. 

 PrESOgenesis applied  a probability  score  >0.5 to designate putative related protein.