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Copy proteindb.py to ~/.blender/scripts
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Create a directory for per-frame pdb files and name it the same as the structure (e.g. "c60")
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Each per-frame pdb file should be named with the frame number and ".pdb" extension. e.g. "1.pdb" through "999.pdb" and placed in the "c60" directory
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Run the script, choose your structure file (e.g. "c60.pdb")
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Advancing the frames will animate the structure
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To create the pdb frames from GROMACS, use the trjconv program:
trjconv -s <structure> -f traj.trr -o .pdb -sep
mooreth / old-stuff Goto Github PK
View Code? Open in Web Editor NEWThis project forked from devrandom/nanotools
GROMACS to Blender script, and maybe more in the future