Comments (4)
If folks want to do this that’s fine. At some point jbrowse will work with Ensembl.
I wouldn’t do this unless Dipper is pulling from the same version as Ensembl. Currently Ensembl is often behind the mods (which is my understanding of where data is coming from for dipper).
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From @cmdcolin . . this would be the range query API: https://rest.ensembl.org/documentation/info/overlap_region
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I think this API will work, but I think the problem is that gene data for non-human is largely pulled from the MOD sources, which are not necessarily aligned with Ensembl (and I know in some cases they are not by design as in the case with ZFIN).
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@nathandunn - so what happened, then? Was there a decision not to do this?
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Related Issues (20)
- Shift Publications html content to yaml
- Create a list of requirements for UI redesign HOT 2
- Create a components structure diagram for current status HOT 1
- Create a components structure diagram for future status
- (Re)Define the Monarch target audience & user story
- User in China unable to access monarchinitiative.org but can access beta.monarch HOT 8
- Evidence tables broken - displaying endless ajax spinner
- Convert Static data to YAML HOT 5
- Submitting an empty search returns results for 'undefined'
- Publication pages return error from biolink
- minor edits to Team page HOT 12
- Mark this repo deprecated HOT 1
- Update web services documentation
- Update ontology licensing info HOT 2
- Add instructions for submitting data/knowledge to Monarch
- Mastodon account for Monarch HOT 3
- LinkedIn account for Monarch? HOT 1
- YouTube Monarch channel HOT 3
- Deploy Production action has recently broken HOT 1
- Remove Twitter widget from homepage HOT 1
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