Code Monkey home page Code Monkey logo

247646's Introduction

<html>
  The models for the paper:<p/>
  
  A phantom bursting mechanism for episodic bursting, R. Bertram, J. Rhoads and W.P. Cimbora, 2008, Bulletin of Mathematical Biology, 70, 1979-1993. <p/>
  PubMed ID: 18648884<p/>
  <a href="http://dx.doi.org/10.1007/s11538-008-9335-0">doi: 10.1007/s11538-008-9335-0</a>
  <p/>
  are available in xpp at the authors web site:<p/>
  <a href="https://www.math.fsu.edu/~bertram/software/neuron/">https://www.math.fsu.edu/~bertram/software/neuron/</a><p/>
  After starting the BMB_08b.ode, and then for second graph BMB_08b_noisy.ode below in xpp select Initalconds -> Go to generate these images:<p/>
<img src="./screenshot1.png" alt="screenshot 1"><p/>
<img src="./screenshot2.png" alt="screenshot 2"><p/>

<p/>
and the noise-less version is available at cellml.org:<p/>
<a href="https://models.cellml.org/exposure/48e767ee37f347e1a3876d0549a0866b/bertram_2008.cellml/view">https://models.cellml.org/exposure/48e767ee37f347e1a3876d0549a0866b/bertram_2008.cellml/view</a><p/>
After loading the bertram_2008.cellml.xml in opencor, right click the membrane voltage in the parameter panel and select to plot against either integration variable (top plot), or s2 (buried in Plot against -> ls2 -> s2 -> s2):<p/>
<img src="./screenshot3.png" alt="screenshot 3" width="650"><p/>
It reproduces figure 4, where g_K1 = 20pS
</html>


247646's People

Contributors

polinaovchinnikova avatar

Watchers

 avatar  avatar  avatar

Forkers

opensourcebrain

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    ๐Ÿ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. ๐Ÿ“Š๐Ÿ“ˆ๐ŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google โค๏ธ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.