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Home Page: https://fastmonai.no
License: Apache License 2.0
Simplifying deep learning for medical imaging
Home Page: https://fastmonai.no
License: Apache License 2.0
I'm trying to use fastMONAI with some H100 GPUs on an HPC. I've installed PyTorch following their instructions and am using CUDA v12. However, after installing fastMONAI via pip, it seems to revert the PyTorch CUDA version to 11.7.
I am using a directory path that contains sub-directories with DICOM files. An error message is produced that no DICOM files could be found. Please add capabilities to find all DICOM files in all sub-directories.
The regression tutorial link does not work. Is it available for sharing?
fastMONAI will not install on Python v3.10 because spaCy will not build on this version - see explosion/spaCy#9418.
Hi,
I've got an error running the notebook of the paper (https://colab.research.google.com/github/MMIV-ML/fastMONAI/blob/master/paper/paper.ipynb).
File ["<ipython-input-59-e08cef295d53>"](https://localhost:8080/#), line 2
store_variables(pkl_fn='models/vars.pkl', size, reorder, resample)
^
SyntaxError: positional argument follows keyword argument
I think the line should be
store_variables('models/vars.pkl', size, reorder, resample)
(I'm reviewing at openjournals/joss-reviews#5297)
Thanks for the hard work putting this together! It has been really useful for me.
Is it possible to provide a tuple of images to a datablock as the x value?
I have:
dblock = MedDataBlock(
blocks=(ImageTupleBlock(cls=MedImage), MedMaskBlock),
splitter=RandomSplitter(),
get_x=ColReader('qsm_files'),
get_y=ColReader('seg_files'),
item_tfms=[
PadOrCrop([80, 80, 80]),
RandomFlip(axes=("LR",)),
RandomFlip(axes=("AP",)),
RandomAffine(degrees=(90, 90, 90)),
ZNormalization(),
],
reorder=requires_resampling,
resample=suggested_voxelsize
)
But instead of using get_x=ColReader('qsm_files')
, I want to retrieve multiple medical images to learn from multimodal data. I do not see any example of this and am unsure how to approach it. Do you have any advice?
Hi fastMONAI team, just want to let you know that now fastmonai.no returns 404 on access.
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