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compute_rtop's Introduction

compute_RTOP

Compute RTOP of a diffusion MRI image on a specified mask.

Requires 4 arguments:

  • path to the dMRI image
  • path to the mask on which to compute RTOP (must be in the same space as the dMRI image)
  • path to the b-values used during the acquisition
  • path to the b-vectors used during the acquisition

Installation

Using pip (within the directory):

python3 -m pip install .

OR manually:

python setup.py install

Dependencies

  • nibabel
  • dipy
  • astropy

compute_rtop's People

Contributors

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Forkers

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