GOSSIS: The Global Open Source Severity of Illness Score
For more information about the GOSSIS consortium, please visit https://gossis.mit.edu/
This repository is focused on the extraction part of the GOSSIS pipeline. It extract consistent concepts from multiple databases. Currently only the ANZICS and eICU-CRD datasets are used to build the GOSSIS-1 model.
For code used to compute GOSSIS predictions, please see: https://github.com/jraffa/rGOSSIS1
Adding variables
- Add the info to
etc/variable-definitions.yaml
- Run
python3 variablelist2description.py
- Run
python3 variablelist2header.py
- Add the variable to each
load-data.ipynb
- sometimes this involves adding it to underlying SQL scripts as well - Re-run everything - if not available, the notebooks should prompt you about it