Welcome! This Min-Yao's repository for CcLBD25 project. These R scripts were used in the project: CcLBD25 functions as a key regulator of haustorium development in Cuscuta campestris
We used these scripts following this order:
After SOM clustering, we selected candidate clusters and used these genes to construct gene co-expression networks (GCN) by using the 'GCN' script.
This GCN script is modified from Hokuto Nakayama's previously published R script for RNA-Seq gene coexpression network analysis deposited on GitHub (Link: https://github.com/Hokuto-GH/gene-coexpression-network-script).