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rna-seq's Issues

"featureCounts -g gene_name" sometimes may not work

Hi,

Wonderful pipeline, saved me a lot of time searching through tutorials for data processing and figure presentation!

I noticed that in the script, STAR_pipeline.sh, featureCounts -g gene_name may require that the GFF must have a "gene_name" field. However for some GFF, there might only be a "gene_id" field instead of "gene_name".

Anyway, thanks for the great pipeline!

Best,
Junhui

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