Comments (3)
The microbiome::divergence
function can already be used for this purpose, at least to some extent. We can develop it further, though. Some examples in the tutorial.
from microbiomeutilities.
Yes I think the microbiome::divergence
function can be wrapped for more intuitive and global comparison (compare_divergence
/global_divergence
) to get something as shown below. I got some request for this. IMO the appropriate place for this is microbiome
pkg.
from microbiomeutilities.
Good to me. PRs are welcome, or we may implement it when time allows.
from microbiomeutilities.
Related Issues (20)
- get_group_abundances group argument without NULL as default HOT 1
- heatmap HOT 8
- Error with plot_taxa_cv() HOT 3
- Cannot install microbiomeutilities on R, what to do? HOT 6
- rlang::last_error() HOT 3
- Phy_tree not included in the result of format_to_besthit HOT 2
- Relative abundance plot for selected taxa HOT 5
- Taxonomic levels should be either 6 (untill genus) or 7 (until species) level HOT 1
- Problem to install HOT 6
- Error in `check_aesthetics()`: ! plot_ordination_utils HOT 2
- plot_taxa_barplot - HOT 4
- format_to_besthit edit HOT 1
- double genus name in heatmap HOT 1
- plot_taxa_boxplot error HOT 2
- Taxonomic_Levels Percent_Classification HOT 2
- Unable to change levels of group variable in plot_paired_abundances
- Plot_spaghetti - same results each result-cell. Idea about why?
- Problem to load HOT 1
- A HOT 8
- error with plot_taxa_heatmap
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from microbiomeutilities.