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antagomir avatar antagomir commented on June 15, 2024 1

I agree in general. The plots on this could be improved. I am also not a fan of violin plots.

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muhamanz avatar muhamanz commented on June 15, 2024

Thank you for your outstanding work on miaVIZ. The current plots from plotExpression can be cluttered and less informative. It would be immensely helpful to have more general plotting functions, such as those incorporating boxplots or violin plots. These additional plot types could better highlight significant species or taxa differences between study groups, especially in DAA analysis. For instance, a grouped boxplot could effectively highlight the significance of differences between study groups, offering a clearer and more informative representation of the data.

Thank you for considering this enhancement.

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antagomir avatar antagomir commented on June 15, 2024

Related to #114 ?

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