Comments (4)
I agree in general. The plots on this could be improved. I am also not a fan of violin plots.
from miaviz.
Thank you for your outstanding work on miaVIZ. The current plots from plotExpression can be cluttered and less informative. It would be immensely helpful to have more general plotting functions, such as those incorporating boxplots or violin plots. These additional plot types could better highlight significant species or taxa differences between study groups, especially in DAA analysis. For instance, a grouped boxplot could effectively highlight the significance of differences between study groups, offering a clearer and more informative representation of the data.
Thank you for considering this enhancement.
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Related to #114 ?
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Related Issues (20)
- plotAbundanceDensity colors
- plotRDA ellipse's confidence level
- plotAssay HOT 7
- More options from ggplot for plotAbundanceDensity HOT 7
- Error in .merge_tree_vis_data(tree_data, feature_info) : . HOT 3
- print x-axis label in plotAbundance HOT 2
- Update the pkg in Bioc devel HOT 1
- Check fails HOT 2
- Ordination plots with trajectories: add examples HOT 3
- Enable examples and tests
- Update Bioc devel HOT 1
- argument names
- Default ranks HOT 3
- RDA influences from microViz
- plotAbundanceDensity options
- plotRDA, plot loadings HOT 1
- plotRowTree error
- sysreqs error
- Strange example HOT 1
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