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mich11's Projects

caiman icon caiman

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

crossing-detector icon crossing-detector

Simple plugin to detect when signals rise or fall across thresholds, for the Open Ephys GUI.

deeplabcut icon deeplabcut

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals

discipline icon discipline

65% keyboard assembled with only through hole components, including usb type-c

gui icon gui

Software for electrophysiology data acquisition

multi-band-integrator icon multi-band-integrator

An open-ephys plugin that allows to mix, weight, and apply a rolling average to bandwidths of interest on a single channel. We're using it to detect absence-like seizures in mice in real time.

plugin-gui icon plugin-gui

Software for processing, recording, and visualizing multichannel electrophysiology data

recordblock icon recordblock

Plugin for open ephys that records in blocks of time. Good for long recordings. We use it for overnights.

suite2p-1 icon suite2p-1

cell detection in calcium imaging recordings

swdetector icon swdetector

MATLAB code for SWD classification (absence seizures) in EEG; comes with both general purpose code for building a logistic-regression classifier using wavelet-derived features, and a pre-built model for detecting SWDs in EEG data

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