Source code for RedCDR: Dual Relation Distillation for Cancer Drug Response Prediction published in IEEE/ACM TCBB 2024.
This project was run in a conda virtual environment on Ubuntu 16.04 with CUDA 10.1.
- python=3.6.13
- torch==1.8.0
- torch-cluster==1.5.9
- torch-geometric==2.0.3
- torch-scatter==2.0.6
- torch-sparse==0.6.10
- rdkit==2020.09.1.0
- deepchem==2.5.0
- pubchempy==1.0.4
Please unzip the file: data/Drug/drug_graph_feat.zip first.
- python main_gdsc.py
- python main_ccle.py
This project is built with the reference to the following open-source projects: GraphCDR, NIHGCN.