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analytic-pf2

Attempting analytical PARAFAC solving for more accurate PARAFAC2 fitting.

asmlab.org

Meyer lab website

axldiffeq

Gas6 signaling model for TAM receptors

axlomics

bal-pf2

Pf2 analysis of BAL samples

barney-peyton

Code for modeling performed in Barney et al.

bi-cytok

Modeling bispecific cytokine fusions.

cell-selective-ligands

A modeling perspective on cell selective ligands

cmtf-pls

A Partial Least Squares (PLS) implementation in CMTF.

common

Common elements for projects across the lab.

cptac-tensor

Exploring the CPTAC dataset using coupled tensors.

ddmc

Clusters phosphoproteomics data based on a combination of the sequence information and abundance changes over conditions.

de-learning

Scaling up perturbation biology models.

deposit-analysis

drugresponsemodel.jl

This is to show oscillations in the number of cells in G1 and in G2 phase of cell cycle.

fc-deconvolute

Using deconvolution to identify the contribution of glycans to Fc binding.

fcgr-binding

A Multivalent Binding Model for FcgRs

fcregression.jl

Study Fc antibody dynamics using a multivalent binding model

fcrn-trafficking

Trafficking model of FcRn to explain the effects of failed release at the cell surface.

fctranslation.jl

A translation model for the Fcγ receptors.

flowcytometrytoolsfork

A python package for visualization and analysis of high-throughput flow cytometry data

gc-cytokines

A binding-reaction model for the common gamma chain receptor cytokines.

gc-valent

Exploring what valency does to IL-2.

gcsolver

C++ solver for the gamma chain cytokines

gcsolver.jl

A gamma chain solver in Julia

il4-model

longitudinalserology

Systems serology with time as a continuous mode

mechanismencoder

Developing patient-specific phosphoproteomic models using mechanistic autoencoders

mechanismserology

Factoring systems serology data with a mechanistic binding model.

misc-docs

Miscellaneous documents for the Meyer lab.