metagenome-atlas Goto Github PK
Type: Organization
Type: Organization
ATLAS - Three commands to start analyzing your metagenome data
Hand output of Atlas to Anvio
Scripts to get the most of the output of metagenome-atlas
This repo contains the environment needed for the Tutorial
Snakemake profile for cluster submission of Atlas on almost any cluster system
Demo of metagenome Atlas
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
This is an example output of metagenome Atlas v2.4
Extended genecatalog workflow for metagenome-atlas
Snakefile pipeline for taxonomic and functional annotation of (Metagenome assembled) genome
This is a workflow that allows you to download whole projects and metadata with kingfisher. Additionally, it takes care about merging same samples together.
Workflow module for metagenome assembly
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Workflow for quantifications
A snakemake for GTDB-tk
A collection of snakemake-workflows for metagenomics that can be used as modules
This is the development home of the Snakemake wrapper repository, see
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
Supplementary data for Atlas manuscript
A tutorial for Metagenome-Atlas
Tutorial given in 2021
atlas extension for phage discovery
Snakemake workflow to detect and classify viruses in metagenome assemblies.
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