mef51 / fiberloss Goto Github PK

error:

plotting axon #4 in fiber #0...
plotting axon #5 in fiber #0...
Traceback (most recent call last):
  File "./nervefibers.py", line 705, in <module>
    main()
  File "./nervefibers.py", line 699, in main
    plotCompoundPotential(simulation, n=11)
  File "./nervefibers.py", line 631, in plotCompoundPotential
    node = fiber.axonNodes[arrayIndex]
IndexError: list index out of range

fix: dunno man

fix: check and create the folders if they're not there

To reproduce:

• Run with units

  • set

      USE_UNITS = True

  • Run simulation
  • call plotMembranePotentialOfNodes(nerve) after simulation, save images in a folder

• Run without units

  • set

  USE_UNITS = False # this should just make things FASTER

  • Run simulation
  • call plotMembranePotentialOfNodes(nerve) after simulation, save images in another folder

Results
With units:

With no units:

The distances are different but don't account for the difference in membrane potential.

The unum unit library handles situations like 1mA + 1A = 1.001A but fastunits.py does not. This might be the source of the problem.