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IndexError while outputting plots

error:

plotting axon #4 in fiber #0...
plotting axon #5 in fiber #0...
Traceback (most recent call last):
  File "./nervefibers.py", line 705, in <module>
    main()
  File "./nervefibers.py", line 699, in main
    plotCompoundPotential(simulation, n=11)
  File "./nervefibers.py", line 631, in plotCompoundPotential
    node = fiber.axonNodes[arrayIndex]
IndexError: list index out of range

fix: dunno man

Results differ when using units and when not using units.

To reproduce:

  • Run with units

    • set
        USE_UNITS = True
    • Run simulation
    • call plotMembranePotentialOfNodes(nerve) after simulation, save images in a folder
  • Run without units

    • set
    USE_UNITS = False # this should just make things FASTER
    • Run simulation
    • call plotMembranePotentialOfNodes(nerve) after simulation, save images in another folder

Results
With units:
withunitson

With no units:
nounits

The distances are different but don't account for the difference in membrane potential.

The unum unit library handles situations like 1mA + 1A = 1.001A but fastunits.py does not. This might be the source of the problem.

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