Comments (4)
CatarinaCarolina
commented on August 14, 2024
Hi!
It appears you are giving BiG-SCAPE MIBiG gbks that are not an output of antiSMASH -> BiG-SCAPE requires antiSMASH processed gbks as input.
To get these you can open the relevant MIBiG page -> 'View antiSMASH-generated output' -> 'Download region GenBank file'.
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jorgecnavarrom
commented on August 14, 2024
Hi
Just to add to Catarina's comment: BiG-SCAPE will take any gbk, but as you see in your example, it uses the antiSMASH annotations to classify the input into biosynthetic classes, otherwise it will simply put them in the "Other" class.
Also, as there is a lot of diversity within t2PKSs (or any other class), they won't necessarily cluster together
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github-actions
commented on August 14, 2024
This issue has not seen activity for 14 days and has been marked as stale. Please comment with additional information if this issue is still relevant.
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github-actions
commented on August 14, 2024
This issue has been stale for 14 days and has been closed. Please feel free to re-open this issue if necessary.
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Related Issues (20)
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