Comments (2)
adraismawur
commented on July 16, 2024
Hello!
BiG-SCAPE 1.x assigns family numbers by using the index of the cluster which is chosen as the centroid by affinity propagation. This is why both the family may start at 0, and why there are large jumps in number (a family of 7 clusters will cause a jump of 1 through 7).
We are working on version 2.0 which assigns family numbers starting at 1, and assigns them consecutively. Unfortunately it is difficult to adapt version 1.x to do the same.
from big-scape.
alpole23
commented on July 16, 2024
Hi adraismawur,
I understand. Thanks for the explanation!
from big-scape.
Related Issues (20)
- MIBiG 3.1 files have no Biosynthetic Genes HOT 2
- ```NameError: name 'genbankDict' is not defined``` when the input gbk file is not detected with domain. HOT 6
- How to install the latest Bigscape? HOT 4
- index.html network exprot HOT 2
- Update of the BiG-SCAPE bioconda recipe HOT 3
- bump version number? HOT 3
- BGC_fasta_folder is not defined HOT 3
- Stopped at Hmmalign step HOT 6
- how can i install BiG-SCAPE
- Incorrect number of genomes detected in overview of output HOT 3
- cannot view index.html and tutorial files won't unzip HOT 6
- MIBiG t2pks BGCs not grouping into families HOT 4
- Random BGC families not showing in mixed class HOT 3
- index.html won't finish loading data HOT 6
- The error "did not find file MIBiG_1.4_final.zip" HOT 2
- NameError: name 'bgc_fasta_folder' is not defined HOT 5
- How to update Big-scape HOT 4
- bigscape v1.1.5 runtime error (missing 1 required positional argument: 'output_folder') HOT 1
- Issue with input using WSL HOT 4
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from big-scape.