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cubex's Introduction

CubeX: Cubic exact solutions for the estimation of pairwise haplotype frequencies

CubeX is a python CGI and standalone script for the estimation of pairwise haplotype frequncies for biallelic genetic variants. The original paper in BMC Bioinformatics provides detail on the mathematics underlying this approach.

CubeX online webapp

Code

  • cubex_web contains the cgi script and an html form (plus associated image)
  • cubex-cl.py is the standalone python script that can be run at the command line

Reference

Please cite the following publication if you use this software in your published work

  • Tom R Gaunt, Santiago Rodríguez and Ian NM Day. Cubic exact solutions for the estimation of pairwise haplotype frequencies: implications for linkage disequilibrium analyses and a web tool 'CubeX'. BMC Bioinformatics20078:428. DOI: 10.1186/1471-2105-8-428

cubex's People

Contributors

t0mrg avatar

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