Light

mchizk1 / ua_fruit_breeding Goto Github PK

View Code? Open in Web Editor NEW

0.0 1.0 0.0 946 KB

This repository serves to document, share, and collaborate on scripts used in the University of Arkansas fruit breeding lab.

R 44.34% Shell 1.17% SAS 16.65% C++ 11.96% ImageJ Macro 25.88%

horticulture bioinformatics research plant-breeding phenotyping polyploid

ua_fruit_breeding's Introduction

UA_Fruit_Breeding

UA Blackberry GWAS Project

See the markdown for documentation of the project thus far! Or see the code below.
readVCF_ARonly.R - This is a script for filtering the 8.7 Gb VCF file from RAPiD Genomics
Dogify.R - Making tetraploid incremental SNP calls in updog and formatting for GWASpoly.

GST4 Muscadine Validation Project

See the markdown for documentation.

Miscellaneous R

QRlist.R - Generates a list of QR codes for the Fieldbook App with additional descriptive plot info
BLUP.R - Estimating Best Linear Unbiased Predictions (BLUPs) in R with lme4 for phenotypic GWAS data

Miscellaneous SAS

BLUPs.sas - Estimating Best Linear Unbiased Predictions (BLUPs) in SAS for phenotypic GWAS data
MultiMixed.sas - A handy SAS macro for running PROC MIXED over multiple traits with fewer lines of code

Other Scripts

Vibration_Table.ino - This is an Arduino script used to estimate frequency and displacement from tachometer and accelerometer data. A big thanks to Randy Andress in Biological and Agricultural Engineering for writing this for us.
BKB_IJ.ijm - An ImageJ macro script that standardizes white-balance, estimates RDR, and counts drupelet number.

ua_fruit_breeding's People

Contributors

Watchers

Recommend Projects

React

A declarative, efficient, and flexible JavaScript library for building user interfaces.
Vue.js

🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript

TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
TensorFlow

An Open Source Machine Learning Framework for Everyone
Django

The Web framework for perfectionists with deadlines.
Laravel

A PHP framework for web artisans
D3

Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

javascript

JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
web

Some thing interesting about web. New door for the world.
server

A server is a program made to process requests and deliver data to clients.
Machine learning

Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Visualization

Some thing interesting about visualization, use data art
Game

Some thing interesting about game, make everyone happy.

Recommend Org

Facebook

We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft

Open source projects and samples from Microsoft.
Google

Google ❤️ Open Source for everyone.
Alibaba

Alibaba Open Source for everyone
D3

Data-Driven Documents codes.
Tencent

China tencent open source team.