Comments (1)
An example of the output of unknown mutations
"Capreomycin": {
"evidence": [
{
"gene": "tlyA",
"residue": "DNA",
"variant": "A133G",
"vcfid": "9976be1b"
}
],
"predict": "U"
},
"Levofloxacin": {
"evidence": [
{
"gene": "gyrB",
"residue": "DNA",
"variant": "GAGCAG2223CAGCAG",
"vcfid": "3f53e611"
}
],
"predict": "U"
},
from drprg.
Related Issues (20)
- False positive argmatch results HOT 1
- Run drprg HOT 4
- Add grammar for specifying variant "expert" rules
- Benchmark figures HOT 7
- Parse pandora VCF to detect minor alleles HOT 46
- Update pandora and make_prg HOT 2
- Deal with gene absence HOT 9
- Add some common resistance-conferring mutations that do no exist in population graph HOT 8
- Notice partial gene deletion that spans start codon HOT 8
- Targeted sequencing mode HOT 1
- Disruptive in-frame indels HOT 3
- Lineage calling HOT 1
- Add install instructions to README.md
- How do i pronounce this tool name HOT 1
- Installation_error HOT 2
- Collate_drprg_results HOT 1
- error: unrecognized subcommand 'index' HOT 4
- Paired-end fastq files HOT 1
- Missing expected output file /test/outdir/discover/denovo_sequences.fa HOT 5
- Index is not valid, missing files error HOT 2
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from drprg.