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Marnik Bercx's Projects

atomate icon atomate

atomate is a powerful software for computational materials science and contains pre-built workflows.

bandscape icon bandscape

Python package with tools to plot 2D band structures from VASP calculations.

cage icon cage

A set of tools to study the energy landscape around cage molecules.

cellconstructor icon cellconstructor

A python utilities to handle with atomic structures and interfacing with common formats (xyz and quantum-espresso).

custodian icon custodian

A simple, robust and flexible just-in-time job management framework in Python.

genson icon genson

GenSON is a powerful, user-friendly JSON Schema generator built in Python.

hq-tests icon hq-tests

Collections of files and scripts to do tests for HyperQueue on clusters

hyperqueue icon hyperqueue

Scheduler for sub-node tasks for HPC systems with batch scheduling

jarvis icon jarvis

Joint Automated Repository for Various Integrated Simulations (JARVIS) is an integrated framework for computational science using density functional theory, classical force-field/molecular dynamics and machine-learning.

jlab-workshop icon jlab-workshop

Repository for the material of the Antwerp Young Minds JupyterLab workshop

jupyter icon jupyter

My humble repository of jupyter notebooks

phd-thesis icon phd-thesis

My PhD thesis, defended at the University of Antwerp in March 2020.

pybat icon pybat

Package with CLI tools to quickly manipulate structure files and set up calculations for research on battery cathodes.

pymatgen icon pymatgen

Python Materials Genomics (pymatgen) is a robust materials analysis code that defines core object representations for structures and molecules with support for many electronic structure codes. It is currently the core analysis code powering the Materials Project.

qe-tools icon qe-tools

A set of useful tools for Quantum ESPRESSO

quotas icon quotas

Package designed to help set up VASP calculations for input used in the QUOTAS model.

sirius icon sirius

Domain specific library for electronic structure calculations

sl3me icon sl3me

A Python3 implementation of the Spectroscopic Limited Maximum Efficiency (SLME) analysis of solar absorbers

vsc-workflows icon vsc-workflows

Python package for quickly setting up workflows on the clusters of the VSC (Vlaams Supercomputer Centrum).

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