Comments (8)
maximilianh
commented on July 30, 2024
wow! This is strange! Does it work with genome-test.gi.ucsc.edu ?
…On Tue, Sep 25, 2018 at 7:06 PM, Jeltje ***@***.***> wrote:
Following the README:
rsync -Lavzp hgwdev.soe.ucsc.edu::cells/datasets/pbmc3k ./pbmc3k/
--progress
Results in
rsync: failed to connect to hgwdev.soe.ucsc.edu (128.114.198.32): Connection refused (111)
rsync error: error in socket IO (code 10) at clientserver.c(125) [Receiver=3.1.2]
—
You are receiving this because you are subscribed to this thread.
Reply to this email directly, view it on GitHub
<#34>, or mute the thread
<https://github.com/notifications/unsubscribe-auth/AAS-TfFykgc5u8-gXaGBJzU1culbfetlks5ueuEYgaJpZM4W5xXQ>
.
from cellbrowser.
Jeltje
commented on July 30, 2024
No, same error
I tried this from a different location just to be sure.
from cellbrowser.
maximilianh
commented on July 30, 2024
The admins forgot to switch on hgwdev... I requested it now, but it may
take 1-2 days to update...
from cellbrowser.
maximilianh
commented on July 30, 2024
The admins have fixed the rsync server.
…On Sat, Sep 29, 2018 at 4:38 AM Maximilian Haeussler ***@***.***> wrote:
The admins forgot to switch on hgwdev... I requested it now, but it may
take 1-2 days to update...
from cellbrowser.
Jeltje
commented on July 30, 2024
Great, but now I get a different error:
rsync -Lavzp hgwdev.soe.ucsc.edu::cells/datasets/pbmc3k ./pbmc3k/ --progress
receiving incremental file list
rsync: link_stat "/datasets/pbmc3k" (in cells) failed: No such file or directory (2)
from cellbrowser.
maximilianh
commented on July 30, 2024
fixed now, sorry, but this is related to #35, so hold off for a bit, until
I've run the example myself again...
from cellbrowser.
maximilianh
commented on July 30, 2024
OK, I got the example to work! It's not optimal (see the README, it
currently only exports the most variable genes, which may be what you
want, or not, let me know if it's not).
from cellbrowser.
Jeltje
commented on July 30, 2024
Hmm not quite. The below is a rerun, the other files were all downloaded.
rsync -Lavzp genome-test.gi.ucsc.edu::cells/datasets/pbmc3k ./pbmc3k/ --progress
receiving incremental file list
symlink has no referent: "/datasets/pbmc3k/cbScanpy" (in cells)
from cellbrowser.
Related Issues (20)
- alert:Could not load mouse_temp_atac/exprMatrix.bin?chr1|3115016|3115356, error undefined HOT 6
- mtx nomenclature in conf file HOT 2
- Question - Linking cellBrowser through another web-app with dynamic data selection HOT 9
- gene expression and proteins together HOT 4
- stop() instead of error() in the cellbrowser.R script? HOT 1
- Special characters in the column names HOT 1
- os.getLogin() function breaks seurat.py HOT 2
- Question/Issue: Index not showing HOT 28
- Split view by dataset HOT 1
- abstract.html do not working HOT 8
- cache problem of google chrome browser or server httpd setting? HOT 3
- Custom colors for each attribute HOT 8
- Cannot find dataset when refreshing HOT 7
- Cannot read single sample name from the matrix HOT 3
- Spatial data in cell browser HOT 9
- [Feature Request] Find Cells by named selection HOT 6
- --useMtx is ignored if too.big == TRUE in runSeurat.R HOT 6
- On killing cbScanpyImport due to Out of memory, process exits with 0 exit code HOT 1
- `scanpy` docs bug still not resolved HOT 5
- Issue w/ running cbSeurat: argument "counts" is missing, with no default HOT 17
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from cellbrowser.