Comments (7)
maximilianh
commented on July 30, 2024
Thank you for this observation, we've had someone else complain about this, and it's not intended to be like this, but a bug that has to do with how the MD5 checksums are calculated. Can you give me a few more details?
having an incorrect MD5 in the URL should not matter, should not trigger an error, as they're after the "?" character, so not part of the URL. The MD5 is there only to get around the caching.
I think your problem is best described like this, let me know if this is not correct:
- you add a dataset to a collection
- you go to the URL of the collection, but the dataset is not there
- you have to reload the page with shift or in another browser to see it.
Is this correct? If so, then somewhere where I calculate the MD5 for the collection, there must be a problem.
from cellbrowser.
samfenske
commented on July 30, 2024
Maximilian, thank you for getting back to me! I can provide more specifics. When I go to the collection URL, the dataset is there, and I can refresh/clear cache, and the dataset will still be there. I can go ahead and open the dataset, but if I now try to refresh/clear cache I get the error. It seems the link is invalid- with a dataset opened and working, if I copy and paste the URL into another tab I get the error.
from cellbrowser.
maximilianh
commented on July 30, 2024
Very odd. This is different from what I thought. Do you have an example of
a failing URL?
…On Mon, Nov 14, 2022 at 4:51 PM Sam Fenske ***@***.***> wrote:
Maximilian, thank you for getting back to me! I can provide more
specifics. When I go to the collection URL, the dataset is there, and I can
refresh/clear cache, and the dataset will still be there. I can go ahead
and open the dataset, but if I now try to refresh/clear cache I get the
error. It seems the link is invalid- with a dataset opened and working, if
I copy and paste the URL into another tab I get the error.
—
Reply to this email directly, view it on GitHub
<#257 (comment)>,
or unsubscribe
<https://github.com/notifications/unsubscribe-auth/AACL4TKIQ35TORLEUEROSM3WIJNWVANCNFSM6AAAAAAR3S45VQ>
.
You are receiving this because you commented.Message ID:
***@***.***>
from cellbrowser.
samfenske
commented on July 30, 2024
The collection is internal so you can't access it without certain VPN, but the URL is structured like this: ...northwestern.edu/long-covid/?ds=01integrated_BAL_v5. Some of our public datasets are available at https://nupulmonary.org/resources/, which are structured the same way.
from cellbrowser.
maximilianh
commented on July 30, 2024
I don't understand how this can happen...
northwestern.edu/long-covid/?ds=01integrated_BAL_v5 doesn't have any MD5 in
it. When you open the console, the error'ing URLs have the ?md5=xxxx in
them, but that's OK. The files should still load. the part after the "?" is
ignored after the URLs...
I wonder if this could have something to do with your webserver... does
this also happen on nupulmonary.org ? Do you know which web server you're
using?
…On Mon, Nov 14, 2022 at 5:26 PM Sam Fenske ***@***.***> wrote:
The collection is internal so you can't access it without certain VPN, but
the URL is structured like this: ...
northwestern.edu/long-covid/?ds=01integrated_BAL_v5. Some of our public
datasets are available at https://nupulmonary.org/resources/, which are
structured the same way.
—
Reply to this email directly, view it on GitHub
<#257 (comment)>,
or unsubscribe
<https://github.com/notifications/unsubscribe-auth/AACL4TJG5LU5UYM5XNYMPELWIJR4RANCNFSM6AAAAAAR3S45VQ>
.
You are receiving this because you commented.Message ID:
***@***.***>
from cellbrowser.
samfenske
commented on July 30, 2024
I only get the md5 code in the error message, it never actually presents itself in the URL. I haven't seen this happen on nupulmonary. I have gotten this error before on our internal browser, but it was a brand new project so I just made a new collection and it worked fine. This collection was functioning fine until last week something must've happened when I was removing datasets. I would remove the data folder and remove the dataset from the dataset.json file, which I've done before and it hasn't caused any issues. The web server we use is apache httpd 2.4.6.
from cellbrowser.
maximilianh
commented on July 30, 2024
I am sorry but if this happens again, I can't say more. Can you send me a
concrete list steps such that I can reproduce this? We don't have the
problem here, it's definitely not related to your webserver, but if I can't
see the error in action and can't open the Javascript console myself, I
can't debug it. If this happens again, you could copy the entire folder to
your public webserver to a hidden location and let me debug it, I can then
say more. Or tell me a list of steps to reproduce it.
If you remove a dataset from a collection, you need to remove the dataset
from the data directory and also on the webserver htdocs directory and also
run cbBuild in the collection directory so that all the links are fixed and
the dataset is actually removed from the collection. I imagine you know
this. Still, there must be some problem with the caching somewhere if this
didn't fix it...
…On Mon, Nov 14, 2022 at 9:38 PM Sam Fenske ***@***.***> wrote:
I only get the md5 code in the error message, it never actually presents
itself in the URL. I haven't seen this happen on nupulmonary. I have gotten
this error before on our internal browser, but it was a brand new project
so I just made a new collection and it worked fine. This collection was
functioning fine until last week something must've happened when I was
removing datasets. I would remove the data folder and remove the dataset
from the dataset.json file, which I've done before and it hasn't caused any
issues. The web server we use is apache httpd 2.4.6.
—
Reply to this email directly, view it on GitHub
<#257 (comment)>,
or unsubscribe
<https://github.com/notifications/unsubscribe-auth/AACL4TOSWJZKFTTQSWAVPNLWIKPK5ANCNFSM6AAAAAAR3S45VQ>
.
You are receiving this because you commented.Message ID:
***@***.***>
from cellbrowser.
Related Issues (20)
- alert:Could not load mouse_temp_atac/exprMatrix.bin?chr1|3115016|3115356, error undefined HOT 6
- mtx nomenclature in conf file HOT 2
- Question - Linking cellBrowser through another web-app with dynamic data selection HOT 9
- gene expression and proteins together HOT 4
- stop() instead of error() in the cellbrowser.R script? HOT 1
- Special characters in the column names HOT 1
- os.getLogin() function breaks seurat.py HOT 2
- Question/Issue: Index not showing HOT 28
- Split view by dataset HOT 1
- abstract.html do not working HOT 8
- cache problem of google chrome browser or server httpd setting? HOT 3
- Custom colors for each attribute HOT 8
- Cannot read single sample name from the matrix HOT 3
- Spatial data in cell browser HOT 9
- [Feature Request] Find Cells by named selection HOT 6
- --useMtx is ignored if too.big == TRUE in runSeurat.R HOT 6
- On killing cbScanpyImport due to Out of memory, process exits with 0 exit code HOT 1
- `scanpy` docs bug still not resolved HOT 5
- Issue w/ running cbSeurat: argument "counts" is missing, with no default HOT 17
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from cellbrowser.