mathieuboudreau Goto Github PK

ads_dockerfile

advent

Advent of Code

airway-diffusion-mri-simulations

Simulates MR diffusion of hyperpolarized gases (e.g. 129Xe) in a budded cylinder airway model using a finite difference method.

anat-processing

Pipeline to process anatomical data, including microstructure metrics from DWI and MT data

axondeepseg

Axon/Myelin segmentation using Deep Learning

b1paper_analysis

b1t1qmt-simulations

binder_test

blank

bloch-seg-pulse-tools

Some miscellaneous tools to generate Bloch-Siegert pulses and calculate the Kbs constant from a pulse file that was used during my PhD. *.pta files were for Siemens scanner, not sure if they are compatible with other vendors.

bulgariansolitaire

BulgarianSolitaire is a game simulator in python for the mathematical problem introduced by Martin Gardner in 1983.

codespace_template

deeplearning

Exercises that I wrote to supplement the Deep Learning (Goodfellow et al.) textbook during my read-through.

girfreco.jl

An Open-Source End-to-End Pipeline for Spiral Magnetic Resonance Image (MRI) Reconstruction in Julia

gold-standard-inversion-recovery-t1-mapping

Joelle Barral's gold standard inversion recovery T1 mapping package

ilumr-courseware

Courseware for the ilumr educational MRI system

ivadomed

Repository on the collaborative IVADO medical imaging project between the Mila and NeuroPoly labs.

mathieuboudreau

matlab_tests

This repository provides a working example of Matlab's testing framework using classes.

mrm_analysis

neurolibre-bpt_bcg

Source code for a Neurolibre-ready Jupyter Book

nnunet

orca-plotly-dockerfile

Dockerfile to run Plotly's Orca on MyBinder

pdf_parser

Script to parse a folder of PDFs for certain keywords. Example in notebook are for open source related keywords.

phd_paper_qmt_optimization

pipelines-jupyter-book

pulseq

Open source framework for pulse sequences

pymincheader

pyMincHeader is a tool to fetch mincheader information in python.

qmt-optimization

Quantitative Magnetization Transfer MRI Optimization Toolbox

qmt-paper-sensivity-analysis