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Marco Meola's Projects

perchlorate-metagenome-2018 icon perchlorate-metagenome-2018

Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and John D. Coates. (2018) Genome-resolved metagenomics identifies genetic mobility, metabolic interactions, and unexpected diversity in perchlorate-reducing communities.

rhea icon rhea

A set of R scripts for the analysis of microbial profiles

seqfilter icon seqfilter

Versatile FASTA/FASTQ sequence file analysis and modification tool

shiny icon shiny

Easy interactive web applications with R

spirit icon spirit

SPIRIT: a LIMS for study/biosample management

split_on_primer icon split_on_primer

Split a FASTQ or FASTA file into sub files based on the primers used.

strainest icon strainest

StrainEst - abundance estimation of strains

travis-ci icon travis-ci

an example builder to build a container with Travis CI, and push to a Singularity Registry Server (or other endpoint)

utilitomics icon utilitomics

This repository is a collection of utility tools that can assist your daily omics study, mainly written in Python and C++

vega icon vega

A visualization grammar.

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