Marco Meola's Projects
Useful bash one-liners for bioinformatics.
Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and John D. Coates. (2018) Genome-resolved metagenomics identifies genetic mobility, metabolic interactions, and unexpected diversity in perchlorate-reducing communities.
My personal website using distill package in R markdown
A set of R scripts for the analysis of microbial profiles
Versatile FASTA/FASTQ sequence file analysis and modification tool
Easy interactive web applications with R
R in a Singularity container
SPIRIT: a LIMS for study/biosample management
Split a FASTQ or FASTA file into sub files based on the primers used.
StrainEst - abundance estimation of strains
StrainFinder
Docker image
an example builder to build a container with Travis CI, and push to a Singularity Registry Server (or other endpoint)
This repository is a collection of utility tools that can assist your daily omics study, mainly written in Python and C++
A visualization grammar.