marcomeola Goto Github PK

16s_dairydb

addinslist

Discover and install useful RStudio addins

advanced-shiny

Shiny tips & tricks for improving your apps and solving common problems

amptk

AMPtk: Amplicon ToolKit for NGS data (formally UFITS)

awesome-r

A curated list of awesome R frameworks, libraries and software.

biobackery_workflows2

add usearch to biobackery/workflows

bioconvert

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

cheese_16s

This is a docker image for 16S microbiome analyses in cheeses and dairy products

covgap

Genome mapping, consensus generating, variant calling and annotation tool for SARS-COV-2

crossvalid_tax

dada2

Accurate sample inference from amplicon data with single nucleotide resolution

dairydb

decipher

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DECIPHER.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=DECIPHER.

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

docker-seekdeep

A dockerfile for building a docker with all needed libraries for SeekDeep

ezrun

An R meta-package for the analysis of Next Generation Sequencing data

fitgrowth

Shiny app for modelling bacterial growth kinetics

genbank-downloaders

A series of small Biopython scripts for downloading sequence data off NCBI's Genbank.

gmms

A manually curated database of human gut metabolic modules.

google-location-heatmap

upload your google location history data and visualize it as a heatmap

htmlwidgets

HTML Widgets for R

humidor

Reads CIGAR strings from bam files and parses them into relevant features for microbial prediction.

koeken

A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.

marcomeola.github.com

Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll

markdown_supported_languages

Markdown supported languages for syntax highlighting

meolab_test

Allan Lab website

microbiome_helper

A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.

mulled

Mulled - Automatized Containerized Software Repository

nanopore

ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers