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Shell 1.08% Scala 2.34% Perl 0.26% C++ 0.90% C 14.55% Cuda 1.82% Objective-C 2.72% GAP 0.27% Haskell 0.07% MATLAB 0.21% TeX 5.01% Mathematica 65.86% Java 3.47% Tcl 0.07% JavaScript 0.18% VHDL 0.96% SuperCollider 0.01% PHP 0.10% M 0.13%

lamp-dp-mt's Introduction

Lamp-DP-MT

Setup instructions for running LMS

Locally publish lms
- $ git clone https://github.com/TiarkRompf/virtualization-lms-core.git
- $ cd virtualization-lms-core
- $ git checkout develop
- patch project/Build.scala:
  - val scalaTest = "org.scalatest" % "scalatest_2.10.0" % "2.0.M5" % "test"
  - val virtScala = Option(System.getenv("SCALA_VIRTUALIZED_VERSION")).getOrElse("2.10.0")
- patch project/build.properties:
  - sbt.version=0.12.1
- $ sbt publish-local
Run the optional tutorial
- $ git clone https://github.com/julienrf/lms-tutorial.git
- $ cd lms-tutorial && sbt run tutorial.Usage

Setup instructions for running the project

Checkout
- $ git clone https://github.com/manojo/lamp-dp-mt.git
- $ cd lamp-dp-mt
Run Scala parsers (with SBT)
- Run simple tests: $ sbt 'clean' 'librna' 'run-main v4.examples.Tests' (only 1 instance of SBT)
- Run any program: $ sbt run
- Run Zuker folding: $ sbt zuker
- Run RNAFold: $ sbt rnafold
- Other problems: mm1,mm2,mm3,align,zuker,rnafold can be run from within SBT
Legacy: run CUDA parsers (without SBT)
- Run CUDA tests: $ ./build
- Cleanup: $ ./build clean
- Get the program list: $ ./build help those ending with Gen are CUDA-enabled
- Run a program with: $ ./build <class>

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