Docker for the OpenMinTeD AS-E use case

To run the AS-E workflow with a local corpus :

sudo docker run -i --rm -v $PWD/:/as-e/data as-e-docker alvisnlp -verbose
-alias readPubMed /as-e/data/alvisir2_corpus/pubmed_result_2.xml
-alias readhtml /as-e/data/alvisir2_corpus/fulltext/html
-alias readWoK /as-e/data/alvisir2_corpus/corpus2000_12012017.txt
-alias exportDocument "sectionsWOKPubMed.txt"
-alias output_fixed_relations "relationsgroup.txt"
-alias output_fixed_entities "entities.txt"
-outputDir /as-e/data/
/as-e/plan/entities.plan

sudo docker run -i --rm -v $PWD/:/as-e/data as-e-docker alvisnlp -verbose -alias readPubMed /as-e/data/alvisir2_corpus/pubmed_result_2.xml -alias readhtml /as-e/data/alvisir2_corpus/fulltext/html -alias readWoK /as-e/data/alvisir2_corpus/corpus2000_12012017.txt -alias exportDocument '"output/sectionsWOKPubMed.txt"' -alias output_fixed_relations '"output/relationsgroup.txt"' -alias output_fixed_entities '"output/entities.txt"' -outputDir /as-e/data/ /as-e/plan/entities.plan

#-entity inputfile /path/on/the/container1/inputfilename -entity outdir /path/on/the/container2 plans/tag_WoS_abstracts.plan```

sudo docker run -i --rm -v /home/echaix/Documents/OpenMinTeD/alvisir2_corpus:/alvisir2_corpus -v /home/echaix/Documents/OpenMinTeD/output:/as-e/output as-e-docker alvisnlp -J "-Xmx30g" -verbose -log output/alvisnlp.log plan/entities.plan

construire : sudo docker build -t as-e-docker . effacer : sudo docker rm $(sudo docker ps -a -q) effacer image spe: sudo docker rmi as-e-docker