Comments (3)
md5sam
commented on September 6, 2024
That's interesting : I've only ever used python2.7, so I believe DiscoverY should work fine with python2. Let me look into this and let you know.
from discovery.
rsharris
commented on September 6, 2024
Discussed this with Tasha. She achieved some speedups by converting to python3. Backward compatibility with python2 wasn't maintained. Probably reasonable since python2 wil lbe a problem for all of us after Jan/1/2020.
The readme should be modified to reflect that, though.
from discovery.
rsharris
commented on September 6, 2024
For my present effort, which is just running the example so I know how to run this, I've just modified my copy of the source code so that it runs under python2. The only change I had to make was that use of maketrans.
from discovery.
Related Issues (11)
- specifying bloom filter size/overflowerror HOT 7
- DiscoverY killed
- question about memory requirements and determining appropriate kmer size HOT 1
- memory
- Dependency list is incomplete?
- Better description of how to run the tool would be helpful HOT 3
- DSK script creates different filename than classify_ctgs wants
- Proportion reported by classify_ctgs.py described incorrectly in README?
- Suffers from bizarre bug in BioPython HOT 1
- DSK abundance limit disagrees with manuscript
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from discovery.