mahmudulalam / automatic-identification-and-counting-of-blood-cells Goto Github PK

can you please help me in this

`Traceback (most recent call last):
File "C:/Users/jagan/Downloads/Automatic-Identification-and-Counting-of-Blood-Cells-master/Automatic-Identification-and-Counting-of-Blood-Cells-master/test.py", line 26, in
output = tfnet.return_predict(image)
File "C:\Users\jagan\Downloads\Automatic-Identification-and-Counting-of-Blood-Cells-master\Automatic-Identification-and-Counting-of-Blood-Cells-master\darkflow\net\flow.py", line 83, in return_predict
'Image is not a np.ndarray'

AssertionError: Image is not a np.ndarray
`

Originally posted by @Jagan3534 in #12 (comment)

I have followed your step on https://github.com/MahmudulAlam/Automatic-Identification-and-Counting-of-Blood-Cells/wiki/A-Step-by-Step-Guide-of-How-to-Run-the-Code but when I do the step 3, runing code by command "python detect.py" on google colab, it report an error below.

Hello sir,
How did you label the data ? sir

Thank you sir

Hello I am using mac

My Laptop configuration
MacOS Catalina
Version- 10.15.3 (19D76)
Processor - 1.8 GHz Dual-Core Intel Core i5
Graphics - Intel HD Graphics 6000 1536 MB

i tried run

python3 blood_cell_detection.py
i got following errors

Akshays-MacBook-Air-2:Automatic-Identification-and-Counting-of-Blood-Cells-master akshaydevkate$ python3 testing_dataset.py Traceback (most recent call last): File "testing_dataset.py", line 6, in <module> from darkflow.net.build import TFNet File "/Users/akshaydevkate/Downloads/Automatic-Identification-and-Counting-of-Blood-Cells-master/darkflow/net/build.py", line 1, in <module> import tensorflow as tf File "/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/tensorflow/__init__.py", line 41, in <module> from tensorflow.python.tools import module_util as _module_util File "/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/tensorflow/python/__init__.py", line 84, in <module> from tensorflow.python import keras File "/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/tensorflow/python/keras/__init__.py", line 27, in <module> from tensorflow.python.keras import models File "/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/tensorflow/python/keras/models/__init__.py", line 21, in <module> from tensorflow.python.keras._impl.keras.models import load_model File "/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/tensorflow/python/keras/_impl/keras/__init__.py", line 21, in <module> from tensorflow.python.keras._impl.keras import activations File "/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/tensorflow/python/keras/_impl/keras/activations.py", line 23, in <module> from tensorflow.python.keras._impl.keras import backend as K File "/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/tensorflow/python/keras/_impl/keras/backend.py", line 38, in <module> from tensorflow.python.layers import base as tf_base_layers File "/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/tensorflow/python/layers/base.py", line 25, in <module> from tensorflow.python.keras import backend File "/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/tensorflow/python/keras/backend/__init__.py", line 22, in <module> from tensorflow.python.keras._impl.keras.backend import abs ImportError: cannot import name 'abs' from partially initialized module 'tensorflow.python.keras._impl.keras.backend' (most likely due to a circular import) (/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/tensorflow/python/keras/_impl/keras/backend.py)

Will i be able to run the code in mac ? some where i tried to install tensorflow-gpu from terminal i got the following output

ERROR: Could not find a version that satisfies the requirement TensorFlow-GPU==1.11.0 ERROR: No matching distribution found for TensorFlow-GPU==1.11.0

After this i uploaded the files on drive and mounted to colab and after executing

!python3 blood_cell_detection.py
the above command

i got the following errors

2021-01-16 19:46:35.482977: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.10.1 Traceback (most recent call last): File "blood_cell_detection.py", line 5, in <module> from darkflow.net.build import TFNet File "/content/darkflow/net/build.py", line 5, in <module> from .ops import op_create, identity File "/content/darkflow/net/ops/__init__.py", line 1, in <module> from .simple import * File "/content/darkflow/net/ops/simple.py", line 1, in <module> import tensorflow.contrib.slim as slim ModuleNotFoundError: No module named 'tensorflow.contrib'

Thanks in advance :)

Hello, I encountered AttributeError: 'NoneType' object has no attribute 'shape' problem when running my data set. How can I solve this problem

when you use the model on high-resolution image and divide image into 3x3grid, how to process the cells at the edge of the image.

I HAVE UPLOADED WEIGHTS IN THE CURRENT DIRECTORY..BUT ITS GIVING ERROR LIKE THIS WHILE TRYING TO RUN detect.py

PLEASE DO HELP ME SIR.

ModuleNotFoundError: No module named 'darkflow.cython_utils.cy_yolo_findboxes' how to solve the error？

Is there any command to evaluate the model.
Specifically, I am looking for:

1. Command to get the accuracy of the model.
2. Command to count the number of cells in the test dataset and compare it with the ground truth
3. Command to get the error values for testing dataset.

I want use you code to train on my own dataset ,and which file or code should i changed?

Hi, I want to identify only one type of cell, how do I adjust the code?

Any ideas on resolving this error? My system meets all of the requirements to run this program

Hi,

Thanks for the awesome work!

I am trying to replicate your work but run into some issues with your weights.

I have downloaded your weights but it comes in different formats. For darkflow, the weights file is .weights but I cannot find this file type from your weights.

(1)Do you have .weights file?

I tried renaming your file tiny-yolo-voc-3c-3750.meta and tiny-yolo-voc-3c-3750.data-00000-of-00001 at file size, 63mb and 189mb, to .weights file but the weight just does not match with your architecture, with the error message below when I run this command, using the original darkflow github repo

flow --model cfg/tiny-yolo-voc-3c.cfg --load bin/tiny-yolo-voc-3c.weights

Note: I copy your tiny-yolo-voc-3c.cfg and rename your file to tiny-yolo-voc-3c.weights to run the above command.

Error message:

AssertionError: expect 63082056 bytes, found 63676889

hi thanks for the work .
even i m using the cython version 0.29.2
File "", line 1, in
from ...utils.im_transform import imcv2_recolor, imcv2_affine_trans

ImportError: attempted relative import with no known parent package

Thank for your source code.
When I try this github, follow the instruction in wiki, I meet following error. I hope you can help me.

(tf_gpu) D:\Download\Automatic-Identification-and-Counting-of-Blood-Cells\Automatic-Identification-and-Counting-of-Blood-Cells-master>python "Blood Cell Detection.py" Traceback (most recent call last): File "Blood Cell Detection.py", line 6, in <module> from darkflow.net.build import TFNet File "D:\Download\Automatic-Identification-and-Counting-of-Blood-Cells\Automatic-Identification-and-Counting-of-Blood-Cells-master\darkflow\net\build.py", line 7, in <module> from .framework import create_framework File "D:\Download\Automatic-Identification-and-Counting-of-Blood-Cells\Automatic-Identification-and-Counting-of-Blood-Cells-master\darkflow\net\framework.py", line 1, in <module> from . import yolo File "D:\Download\Automatic-Identification-and-Counting-of-Blood-Cells\Automatic-Identification-and-Counting-of-Blood-Cells-master\darkflow\net\yolo\__init__.py", line 2, in <module> from . import predict File "D:\Download\Automatic-Identification-and-Counting-of-Blood-Cells\Automatic-Identification-and-Counting-of-Blood-Cells-master\darkflow\net\yolo\predict.py", line 7, in <module> from ...cython_utils.cy_yolo_findboxes import yolo_box_constructor ModuleNotFoundError: No module named 'darkflow.cython_utils.cy_yolo_findboxes'

I downloaded weight, installed cython. I check the folder contain .cy_yolo_findboxes, it exits.
When i find it on google, i found this link thtrieu/darkflow#168. I did as abagshaw suggest, problem is still unsolved.

Does anyone know why? Any help is appreciated.
I use window 10, virtual enviroment of anaconda

Hi, thanks for good work. I have curiosity on how you get the detection with tiny yolo3. which accuracy is lower than original yolo3 model. could you share your training file. thanks -

The loss during model training is 10-20, how to solve it? Can YOLOv7 or higher versions be used?

Hi,
Thanks for this wonderful project.
I am getting some issue while running python detect.py command. Below are the details and it's screenshot. It just gets stuck for lon time. Please refer the screenshots attached.

Hi, thank you for your great work!

I run this experiments according to the wiki step by step. I did not change any hyper-parameters except that I set gpu=0 to use a cpu for training. But I found that the loss became nan just after 1K steps training.

...
step 1655 - loss        nan - moving ave loss        nan
step 1656 - loss        nan - moving ave loss        nan
Finish 92 epoch(es)
step 1657 - loss        nan - moving ave loss        nan
step 1658 - loss        nan - moving ave loss        nan
...

Do you have any idea or have you ever observed this kind of strange thing? Thank you in advance for your help!