Describe the bug
A clear and concise description of what the bug is.

To Reproduce
Steps to reproduce the behavior:

1. Go to '...'
2. Click on '....'
3. Scroll down to '....'
4. See error

Expected behavior
A clear and concise description of what you expected to happen.

Screenshots
If applicable, add screenshots to help explain your problem.

Desktop (please complete the following information):

• OS: [e.g. iOS]
• Browser [e.g. chrome, safari]
• Version [e.g. 22]

Smartphone (please complete the following information):

• Device: [e.g. iPhone6]
• OS: [e.g. iOS8.1]
• Browser [e.g. stock browser, safari]
• Version [e.g. 22]

Additional context
Add any other context about the problem here.

Describe the bug
A clear and concise description of what the bug is.

To Reproduce
Steps to reproduce the behavior:

1. Go to '...'
2. Click on '....'
3. Scroll down to '....'
4. See error

Expected behavior
A clear and concise description of what you expected to happen.

Screenshots
If applicable, add screenshots to help explain your problem.

Desktop (please complete the following information):

• OS: [e.g. iOS]
• Browser [e.g. chrome, safari]
• Version [e.g. 22]

Smartphone (please complete the following information):

• Device: [e.g. iPhone6]
• OS: [e.g. iOS8.1]
• Browser [e.g. stock browser, safari]
• Version [e.g. 22]

Additional context
Add any other context about the problem here.

Steps to reproduce

Select md (with or without bib) and select convert endnote styled citations

Expected behavior

Generate pdf

Actual behavior

server error (file not found)

System configuration

Operating System:

osx 10.13.4

Browser:

firefox 59.0.2

Is your feature request related to a problem? Please describe.
Codecov functionality is offered by Codeclimate.
https://codeclimate.com/github/maehr/typademic/badges

Describe the solution you'd like
Removal of Codecov.

Describe alternatives you've considered
It stays the way it is.

Additional context
Add any other context or screenshots about the feature request here.

Is your feature request related to a problem? Please describe.
The build process is slow and the image is very large.

Describe the solution you'd like
Use https://github.com/pandoc/dockerfiles instead. (Ubuntu images are coming soon!)

Describe alternatives you've considered
NA

Additional context
NA

Is your feature request related to a problem? Please describe.
PDF handling is improved in Pandoc 2.8.

Describe the solution you'd like
Update

Describe alternatives you've considered
None

Additional context
None

Is your feature request related to a problem? Please describe.
According to https://www.texdev.net/2010/04/25/tex-and-security/ and to https://www.usenix.org/system/files/login/articles/73506-checkoway.pdf allowing unrestricted tex code execution is potentially harmful. Due to the "half-baked" architecture of this project this could expose uploads of other users and lead to denial of service. Therefore a in-depth security audit is necessary.

Describe the solution you'd like
Restrict inline tex execution.

Describe alternatives you've considered
Allow unsafe tex while not storing user files.

Additional context
None.

Describe the bug
A clear and concise description of what the bug is.The rendered files are also shown within uploads. Show them seperately.

To Reproduce
Steps to reproduce the behavior:

1. Go to '...'
2. Click on '....'
3. Scroll down to '....'
4. See error

Expected behavior
A clear and concise description of what you expected to happen.

Screenshots
If applicable, add screenshots to help explain your problem.

Desktop (please complete the following information):

• OS: [e.g. iOS]
• Browser [e.g. chrome, safari]
• Version [e.g. 22]

Smartphone (please complete the following information):

• Device: [e.g. iPhone6]
• OS: [e.g. iOS8.1]
• Browser [e.g. stock browser, safari]
• Version [e.g. 22]

Additional context
Add any other context about the problem here.

Is your feature request related to a problem? Please describe.
Pandoc-citeproc is buggy.

Describe the solution you'd like
I want to choose which pdf-enginge (xelatex/pdflatex) and which biblatex engine (pandoc-citeproc/natbib/...) to use.

Describe alternatives you've considered
?

Additional context
Add any other context or screenshots about the feature request here.

Is your feature request related to a problem? Please describe.
Error messages are not formattet nicely

Describe the solution you'd like
Human understandable errors

Describe alternatives you've considered
A clear and concise description of any alternative solutions or features you've considered.

Additional context
Add any other context or screenshots about the feature request here.

Is your feature request related to a problem? Please describe.
Security

Describe the solution you'd like
Stubs are already in the code

Describe alternatives you've considered
None

Additional context
None

The bot created this issue to inform you that pyup.io has been set up on this repo.
Once you have closed it, the bot will open pull requests for updates as soon as they are available.

Describe the bug
The favicon is not readable

To Reproduce
Steps to reproduce the behavior:

1. Go to '...'
2. Click on '....'
3. Scroll down to '....'
4. See error

Expected behavior
A clear and concise description of what you expected to happen.

Screenshots
If applicable, add screenshots to help explain your problem.

Desktop (please complete the following information):

• OS: [e.g. iOS]
• Browser [e.g. chrome, safari]
• Version [e.g. 22]

Smartphone (please complete the following information):

• Device: [e.g. iPhone6]
• OS: [e.g. iOS8.1]
• Browser [e.g. stock browser, safari]
• Version [e.g. 22]

Additional context
Add any other context about the problem here.

Is your feature request related to a problem? Please describe.
There should be a fall back solution if no CSL file is given

Describe the solution you'd like
A clear and concise description of what you want to happen.

Describe alternatives you've considered
A clear and concise description of any alternative solutions or features you've considered.

Additional context
Add any other context or screenshots about the feature request here.

Is your feature request related to a problem? Please describe.
Tex templates with advanced features like indexing should be allowed...

Describe the solution you'd like
A clear and concise description of what you want to happen.

Describe alternatives you've considered
A clear and concise description of any alternative solutions or features you've considered.

Additional context
Add any other context or screenshots about the feature request here.

Is your feature request related to a problem? Please describe.
Rerendering costs time and if the http server times out, everything is lost

Describe the solution you'd like
Serve from file if rendered file available

Describe alternatives you've considered
A clear and concise description of any alternative solutions or features you've considered.

Additional context
Add any other context or screenshots about the feature request here.

Is your feature request related to a problem? Please describe.
The upload folder does not empty out itself.

Describe the solution you'd like
http://stackabuse.com/scheduling-jobs-with-python-crontab/

Describe alternatives you've considered
A clear and concise description of any alternative solutions or features you've considered.

Additional context
Add any other context or screenshots about the feature request here.

Is your feature request related to a problem? Please describe.
I want to see a badge with code coverage information.

Describe the solution you'd like
https://github.com/codecov/example-python

Describe alternatives you've considered
Excoveralls

Additional context
Add any other context or screenshots about the feature request here.

Is your feature request related to a problem? Please describe.
I want typademic to be faster. (And I want to play with vibora.)

Describe the solution you'd like
https://github.com/vibora-io/vibora

Describe alternatives you've considered
Replace sh by a faster way to make system calls.

Additional context
Add any other context or screenshots about the feature request here.

Is your feature request related to a problem? Please describe.
Let people decide what to use instead.

Describe the solution you'd like
Removal of code

Describe alternatives you've considered
Pwiki

Additional context
Add any other context or screenshots about the feature request here.

Is your feature request related to a problem? Please describe.
When uploading md files that refernece images in subfolders (or absolute paths) you get a error message.

Describe the solution you'd like
A clear and concise description of what you want to happen.

Describe alternatives you've considered
A clear and concise description of any alternative solutions or features you've considered.

Additional context
Add any other context or screenshots about the feature request here.

Is your feature request related to a problem? Please describe.
Documentation is missing - apart from readme.md

Describe the solution you'd like
Sphinx

Describe alternatives you've considered
A clear and concise description of any alternative solutions or features you've considered.

Additional context
Add any other context or screenshots about the feature request here.

Is your feature request related to a problem? Please describe.
The web-server used in the moment is for development only. Switch with gunicorn.

Describe the solution you'd like
Stubs are in the code.

Describe alternatives you've considered
Tornado et al

Additional context
None

Describe the bug
CircleCI deploy fails

To Reproduce
Steps to reproduce the behavior:

1. Go to circleci
2. Build tagged version

Expected behavior
Push to dockerhub

Screenshots
None

Desktop (please complete the following information):

• OS: [e.g. iOS]
• Browser [e.g. chrome, safari]
• Version [e.g. 22]

Smartphone (please complete the following information):

• Device: [e.g. iPhone6]
• OS: [e.g. iOS8.1]
• Browser [e.g. stock browser, safari]
• Version [e.g. 22]

Additional context
None

Describe the bug
A clear and concise description of what the bug is.

To Reproduce
Steps to reproduce the behavior:

1. Go to '...'
2. Click on '....'
3. Scroll down to '....'
4. See error

Expected behavior
A clear and concise description of what you expected to happen.

Screenshots
If applicable, add screenshots to help explain your problem.

Desktop (please complete the following information):

• OS: [e.g. iOS]
• Browser [e.g. chrome, safari]
• Version [e.g. 22]

Smartphone (please complete the following information):

• Device: [e.g. iPhone6]
• OS: [e.g. iOS8.1]
• Browser [e.g. stock browser, safari]
• Version [e.g. 22]

Additional context
Add any other context about the problem here.

Describe the bug
The Docker badge in the README is broken.

To Reproduce
...

Expected behavior
Should go here https://hub.docker.com/r/maehr/typademic

Screenshots
If applicable, add screenshots to help explain your problem.

Desktop (please complete the following information):

• OS: [e.g. iOS]
• Browser [e.g. chrome, safari]
• Version [e.g. 22]

Smartphone (please complete the following information):

• Device: [e.g. iPhone6]
• OS: [e.g. iOS8.1]
• Browser [e.g. stock browser, safari]
• Version [e.g. 22]

Additional context
Add any other context about the problem here.

Is your feature request related to a problem? Please describe.
I want to generate two seperate bibliographies, one for literature, one for sources

Describe the solution you'd like
\backmatter
\printbibliography[keyword={Quelle},title={Quellenverzeichnis}]
\printbibliography[keyword={Literatur},title={Literaturverzeichnis}]

Describe alternatives you've considered
?

Additional context
Add any other context or screenshots about the feature request here.

Is your feature request related to a problem? Please describe.
There is a lot of boilerplate YAML definitions that annoy me.

Describe the solution you'd like
I would want some basic templates (article, report, book) that I can tweak with very little effort (or alternatively override with the YAML header block.
See https://www.soimort.org/notes/161117/

Describe alternatives you've considered
Pass it to the pandoc via command line.

Additional context
None.

Describe the bug
A clear and concise description of what the bug is.

To Reproduce
Steps to reproduce the behavior:

1. Go to '...'
2. Click on '....'
3. Scroll down to '....'
4. See error

Expected behavior
A clear and concise description of what you expected to happen.

Screenshots
If applicable, add screenshots to help explain your problem.

Desktop (please complete the following information):

• OS: [e.g. iOS]
• Browser [e.g. chrome, safari]
• Version [e.g. 22]

Smartphone (please complete the following information):

• Device: [e.g. iPhone6]
• OS: [e.g. iOS8.1]
• Browser [e.g. stock browser, safari]
• Version [e.g. 22]

Additional context
Add any other context about the problem here.