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High Throughput Electron Microscopy Image Processing Software

Home Page: http://www.focus-em.org

License: GNU General Public License v2.0

CMake 1.73% Shell 0.29% C++ 43.48% C 5.51% JavaScript 0.07% HTML 0.05% Python 3.36% COBOL 0.01% Fortran 41.24% Makefile 0.07% M4 0.01% Cuda 0.83% R 0.01% DIGITAL Command Language 3.01% QMake 0.01% PHP 0.30% CSS 0.05%

focus's Introduction

FOCUS: High throughput processing of the image stacks recorded by electron microscopes

About
A Graphical User Interface designed using C++ and Qt5 with following features:

  • An import tool which can continuously monitor the new images
  • Scripts which can process these images using in-house and external software. It is easy for the users to define more scripts if required
  • A parallel batch queue processor which transfers processing of the scripts to different resources available on the system
  • A library which summaries the statistics of the collected images
  • A website which can be used to continuously monitor the status of the recorded images

Supported Modes
Focus supports different type of electron microscopy projects which can be set when setting up a new project. Current supported modes are:

  • Drift correction only
  • Single Particle with drift correction
  • 2D Electron Crystallography with drift correction
  • Electron tomography with drift correction

List of dependencies and installation instructions: http://focus.c-cina.unibas.ch/wiki/doku.php?id=1_0:install-source
Setting up external software tools: http://focus.c-cina.unibas.ch/wiki/doku.php?id=1_0:external-tools

General documentation: https://focus.c-cina.unibas.ch/wiki/doku.php?id=home

If FOCUS is useful in your work, please cite:

Biyani, N., Righetto, R. D., McLeod, R., Caujolle-Bert, D., Castano-Diez, D., Goldie, K. N., & Stahlberg, H. (2017). FOCUS: The interface between data collection and data processing in cryo-EM. Journal of Structural Biology, 198(2), 124โ€“133. https://doi.org/10.1016/j.jsb.2017.03.007

focus's People

Contributors

nikhilbiyani avatar scherers avatar rdrighetto avatar paulvanschayck avatar sthennin avatar

Watchers

James Cloos avatar  avatar  avatar Giancarlo avatar  avatar George avatar

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