A tool for RNA secondary structure prediction with deep neural networks. DeepFold learn the underlying RNA folding mechanism directly from structure-known sequences without any energy assumption or parameters, and can also predict pseudoknots. It provides predicting scripts and models for input RNA ct file.
For updates, please refer to https://github.com/lulab/deepfold
DeepFold is free for non-commercial research. For commercial use, please contact the authors.
- Linux
- Python (>=2.7)
- Python packages keras
Run subset model:
python /path/to/folder/deepfold.py -S /path/to/your/input_folder /path/to/your/output_folder/;
Run fullset model:
python /path/to/folder/deepfold.py -F /path/to/your/input_folder /path/to/your/output_folder/;
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Boqin Hu [email protected] Yang Wu [email protected]