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mri-preprocessing-pipeline-light

Light version of mri-preprocessing-pipeline, for installation

mspm

Mass Multivariate methods for neurimaging data

neuro_atlasing

Matlab script for the segmentation of individual T1w images into brain regions defined by SPM12 Neuromephometric atlas.

nmm-pipeline-nifti-organizer

This tool is meant to help data owners to organise their MRI data in such way that it can be pre-processed by the MIP SPM12 neuromorphometric pipeline as wrapped for the MIP.

nmm-pipeline-output-merge

Merge individual MIP formatted output from the NMM pipeline into one single CSV file.

pfa-validator

Validation of the PFA model and its predictive algorithm

portal-backend

Backend for the MIP portal

portal-frontend

Frontend for the MIP portal

portal-specs

Specifications for the web portal

python-base-docker-images

Collection of Docker images for Python, including the base images created for the Algorithm Factory / Woken

qmri

Software for calculation of qMRI data from raw MRI images

r-base-docker-images

Docker images used to integrate the algorithms provided for the Medical Informatics Platform (MIP)

r-mip-adaptor

R helper functions to connect to a database via JDBC

redcap-data-parser

Converts csv files exported from redcap to a microsoft word document

rocker

R configurations for Docker

sample-data-db-setup

Create a set of tables containing sample data in a database

sample-meta-db-setup

sklearn_to_pfa

Convert Scikit Learn models to PFA

sunburst

svm-classification

SVM Classification

ubuntu-for-ci

Base Ubuntu image to use when building and testing projects in continuous integration

web-analytics-demo

Launch the MIP web-analytics components using docker-compose

woken

An orchestration platform for Docker containers running data mining algorithms

woken-db-setup

Creation and control scripts for the Postgres database used to store analytics results in the MIP

woken-messages

Shared library containing the API and messages used in Woken applications

woken-validation

Cross-validation module for Woken, using Spark and PFA

xnat-docker

XNAT on Docker